CRAN/E | iNEXT.4steps

iNEXT.4steps

Four-Step Biodiversity Analysis Based on 'iNEXT'

Installation

About

Expands 'iNEXT' to include the estimation of sample completeness and evenness. The package provides simple functions to perform the following four-step biodiversity analysis: STEP 1: Assessment of sample completeness profiles. STEP 2a: Analysis of size-based rarefaction and extrapolation sampling curves to determine whether the asymptotic diversity can be accurately estimated. STEP 2b: Comparison of the observed and the estimated asymptotic diversity profiles. STEP 3: Analysis of non-asymptotic coverage-based rarefaction and extrapolation sampling curves. STEP 4: Assessment of evenness profiles. The analyses in STEPs 2a, 2b and STEP 3 are mainly based on the previous 'iNEXT' package. Refer to the 'iNEXT' package for details. This package is mainly focusing on the computation for STEPs 1 and 4. See Chao et al. (2020) doi:10.1111/1440-1703.12102 for statistical background.

Citation iNEXT.4steps citation info
sites.google.com/view/chao-lab-website/software/inext-4steps/
Bug report File report

Key Metrics

Version 1.0.0
R ≥ 4.0
Published 2024-04-10 153 days ago
Needs compilation? no
License GPL (≥ 3)
CRAN checks iNEXT.4steps results

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Maintainer

Maintainer

Anne Chao

Authors

Anne Chao

aut / cre

KaiHsiang Hu

ctb

Material

NEWS
Reference manual
Package source

Vignettes

A Quick Introduction to iNEXT.4steps via Examples

macOS

r-release

arm64

r-oldrel

arm64

r-release

x86_64

Windows

r-develnot available

x86_64

r-releasenot available

x86_64

r-oldrelnot available

x86_64

Depends

R ≥ 4.0

Imports

ggplot2
reshape2
dplyr
stats
ggpubr
purrr
iNEXT.3D

Suggests

testthat
knitr
rmarkdown