maldipickr
Dereplicate and Cherry-Pick Mass Spectrometry Spectra
Convenient wrapper functions for the analysis of matrix-assisted laser desorption/ionization-time-of-flight (MALDI-TOF) spectra data in order to select only representative spectra (also called cherry-pick). The package covers the preprocessing and dereplication steps (based on Strejcek, Smrhova, Junkova and Uhlik (2018) doi:10.3389/fmicb.2018.01294) needed to cluster MALDI-TOF spectra before the final cherry-picking step. It enables the easy exclusion of spectra and/or clusters to accommodate complex cherry-picking strategies. Alternatively, cherry-picking using taxonomic identification MALDI-TOF data is made easy with functions to import inconsistently formatted reports.
- Version1.3.1
- R versionunknown
- LicenseGPL (≥ 3)
- Needs compilation?No
- Languageen-US
- maldipickr citation info
- Last release09/12/2024
Documentation
Team
Charlie Pauvert
David Wylensek
Selina Nüchtern
Show author detailsRolesContributorThomas Clavel
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- Imports9 packages
- Suggests5 packages