BAMMtools

Analysis and Visualization of Macroevolutionary Dynamics on Phylogenetic Trees

CRAN Package

Provides functions for analyzing and visualizing complex macroevolutionary dynamics on phylogenetic trees. It is a companion package to the command line program BAMM (Bayesian Analysis of Macroevolutionary Mixtures) and is entirely oriented towards the analysis, interpretation, and visualization of evolutionary rates. Functionality includes visualization of rate shifts on phylogenies, estimating evolutionary rates through time, comparing posterior distributions of evolutionary rates across clades, comparing diversification models using Bayes factors, and more.


Documentation


Team


Insights

Last 30 days

This package has been downloaded 1,905 times in the last 30 days. That's enough downloads to impress a room full of undergrads. A commendable achievement indeed. The following heatmap shows the distribution of downloads per day. Yesterday, it was downloaded 54 times.

Sun
Mon
Tue
Wed
Thu
Fri
Sat
0 downloadsMar 2, 2025
63 downloadsMar 3, 2025
59 downloadsMar 4, 2025
101 downloadsMar 5, 2025
60 downloadsMar 6, 2025
66 downloadsMar 7, 2025
27 downloadsMar 8, 2025
32 downloadsMar 9, 2025
51 downloadsMar 10, 2025
72 downloadsMar 11, 2025
82 downloadsMar 12, 2025
55 downloadsMar 13, 2025
66 downloadsMar 14, 2025
66 downloadsMar 15, 2025
33 downloadsMar 16, 2025
76 downloadsMar 17, 2025
61 downloadsMar 18, 2025
90 downloadsMar 19, 2025
87 downloadsMar 20, 2025
61 downloadsMar 21, 2025
37 downloadsMar 22, 2025
42 downloadsMar 23, 2025
73 downloadsMar 24, 2025
66 downloadsMar 25, 2025
106 downloadsMar 26, 2025
71 downloadsMar 27, 2025
75 downloadsMar 28, 2025
38 downloadsMar 29, 2025
59 downloadsMar 30, 2025
76 downloadsMar 31, 2025
54 downloadsApr 1, 2025
0 downloadsApr 2, 2025
0 downloadsApr 3, 2025
0 downloadsApr 4, 2025
0 downloadsApr 5, 2025
27
106

The following line graph shows the downloads per day. You can hover over the graph to see the exact number of downloads per day.

Last 365 days

This package has been downloaded 20,966 times in the last 365 days. The downloads are officially high enough to crash an underfunded departmental server. Quite an accomplishment! The day with the most downloads was Jul 16, 2024 with 149 downloads.

The following line graph shows the downloads per day. You can hover over the graph to see the exact number of downloads per day.

Data provided by CRAN


Binaries


Dependencies

  • Depends1 package
  • Imports2 packages
  • Reverse Imports2 packages
  • Reverse Suggests1 package