CRAN/E | BacArena

BacArena

Modeling Framework for Cellular Communities in their Environments

Installation

About

Can be used for simulation of organisms living in communities (Bauer and Zimmermann (2017) doi:10.1371/journal.pcbi.1005544). Each organism is represented individually and genome scale metabolic models determine the uptake and release of compounds. Biological processes such as movement, diffusion, chemotaxis and kinetics are available along with data analysis techniques.

BacArena.github.io/
Bug report File report

Key Metrics

Version 1.8.2
R ≥ 3.5.0
Published 2020-05-20 1526 days ago
Needs compilation? yes
License GPL-3
License File
CRAN checks BacArena results

Downloads

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Maintainer

Maintainer

Johannes Zimmermann

Authors

Eugen Bauer

aut

Johannes Zimmermann

aut / cre

Material

README
NEWS
Reference manual
Package source

Vignettes

BacArena-Introduction

macOS

r-release

arm64

r-oldrel

arm64

r-release

x86_64

r-oldrel

x86_64

Windows

r-devel

x86_64

r-release

x86_64

r-oldrel

x86_64

Old Sources

BacArena archive

Depends

R ≥ 3.5.0
sybil ≥ 2.1.3
ReacTran ≥ 1.4.2
deSolve ≥ 1.12
Matrix ≥ 1.2

Imports

methods
utils
stats
graphics
ggplot2
reshape2
glpkAPI
plyr
Rcpp
igraph
stringr
R.matlab

Suggests

parallel
knitr
rmarkdown

LinkingTo

Rcpp
RcppArmadillo
RcppEigen