Canek

Batch Correction of Single Cell Transcriptome Data

CRAN Package

Non-linear/linear hybrid method for batch-effect correction that uses Mutual Nearest Neighbors (MNNs) to identify similar cells between datasets. Reference: Loza M. et al. (NAR Genomics and Bioinformatics, 2020) doi:10.1093/nargab/lqac022.


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  • Imports6 packages
  • Suggests6 packages