ComBatFamQC
Comprehensive Batch Effect Diagnostics and Harmonization
Provides a comprehensive framework for batch effect diagnostics, harmonization, and post-harmonization downstream analysis. Features include interactive visualization tools, robust statistical tests, and a range of harmonization techniques. Additionally, 'ComBatFamQC' enables the creation of life-span age trend plots with estimated age-adjusted centiles and facilitates the generation of covariate-corrected residuals for analytical purposes. Methods for harmonization are based on approaches described in Johnson et al., (2007) doi:10.1093/biostatistics/kxj037, Beer et al., (2020) doi:10.1016/j.neuroimage.2020.117129, Pomponio et al., (2020) doi:10.1016/j.neuroimage.2019.116450, and Chen et al., (2021) doi:10.1002/hbm.25688.
- GitHub
- https://zheng206.github.io/ComBatQC-Web/
- File a bug report
- ComBatFamQC results
- ComBatFamQC.pdf
- Version1.0.5
- R versionR (≥ 4.1.0)
- LicenseMIT
- Needs compilation?No
- Languageen-US
- Last releaselast Monday at 12:00 AM
Documentation
Team
Zheng Ren
MaintainerShow author detailsAndrew Chen
Elizabeth Horwath
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Dependencies
- Imports19 packages
- Suggests8 packages