CpGFilter

CpG Filtering Method Based on Intra-Class Correlation Coefficients

CRAN Package

Filter CpGs based on Intra-class Correlation Coefficients (ICCs) when replicates are available. ICCs are calculated by fitting linear mixed effects models to all samples including the un-replicated samples. Including the large number of un-replicated samples improves ICC estimates dramatically. The method accommodates any replicate design.

  • Version1.1
  • R version≥ 3.1.0
  • LicenseGPL-3
  • Needs compilation?No
  • Last release08/23/2017

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  • Depends1 package
  • Imports2 packages