EpiNow2
Estimate Real-Time Case Counts and Time-Varying Epidemiological Parameters
Estimates the time-varying reproduction number, rate of spread, and doubling time using a range of open-source tools (Abbott et al. (2020)
- https://epiforecasts.io/EpiNow2/
- https://epiforecasts.io/EpiNow2/dev/
- GitHub
- File a bug report
- EpiNow2 results
- EpiNow2.pdf
- Version1.6.1
- R version≥ 3.5.0
- LicenseMIT
- Licensefile LICENSE
- Needs compilation?Yes
- Languageen-GB
- Last release10/31/2024
Documentation
- VignetteGetting started with EpiNow2
- Vignettesource
- VignetteCase studies and use in the literature
- Vignettesource
- VignetteR code
- VignetteUsing epinow() for running in production mode
- Vignettesource
- VignetteModel definition: estimate_infections()
- Vignettesource
- VignetteR code
- VignetteExamples: estimate_infections()
- Vignettesource
- VignetteWorkflow for Rt estimation and forecasting
- Vignettesource
- VignetteModel definition: estimate_secondary()
- Vignettesource
- VignetteR code
- VignetteModel definition: estimate_truncation()
- Vignettesource
- VignetteR code
- VignetteGaussian Process implementation details
- Vignettesource
- VignetteR code
- MaterialREADME
- MaterialNEWS
- In ViewsEpidemiology
Team
Sebastian Funk
Sam Abbott
Joel Hellewell
Katharine Sherratt
Show author detailsRolesAuthorKatelyn Gostic
Show author detailsRolesAuthorJoe Hickson
Show author detailsRolesAuthorHamada S. Badr
Michael DeWitt
James M. Azam
Robin Thompson
Show author detailsRolesContributorSophie Meakin
Show author detailsRolesContributorJames Munday
Show author detailsRolesContributorNikos Bosse
Show author detailsRolesContributorPaul Mee
Show author detailsRolesContributorPeter Ellis
Show author detailsRolesContributorPietro Monticone
Show author detailsRolesContributorLloyd Chapman
Show author detailsRolesContributorAndrew Johnson
Show author detailsRolesContributorKaitlyn Johnson
EpiForecasts
Show author detailsRolesAuthor
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Dependencies
- Depends1 package
- Imports21 packages
- Suggests13 packages
- Linking To6 packages