EpiNow2
Estimate Real-Time Case Counts and Time-Varying Epidemiological Parameters
Estimates the time-varying reproduction number, rate of spread, and doubling time using a range of open-source tools (Abbott et al. (2020) doi:10.12688/wellcomeopenres.16006.1), and current best practices (Gostic et al. (2020) doi:10.1101/2020.06.18.20134858). It aims to help users avoid some of the limitations of naive implementations in a framework that is informed by community feedback and is actively supported.
- Version1.6.1
- R versionunknown
- LicenseMIT
- LicenseLICENSE
- Needs compilation?Yes
- Languageen-GB
- Last release10/31/2024
Documentation
- VignetteGetting started with EpiNow2
- VignetteCase studies and use in the literature
- VignetteUsing epinow() for running in production mode
- VignetteModel definition: estimate_infections()
- VignetteExamples: estimate_infections()
- VignetteWorkflow for Rt estimation and forecasting
- VignetteModel definition: estimate_secondary()
- VignetteModel definition: estimate_truncation()
- VignetteGaussian Process implementation details
- MaterialREADME
- MaterialNEWS
- In ViewsEpidemiology
Team
Sebastian Funk
Hamada S. Badr
Show author detailsRolesAuthorPeter Ellis
Show author detailsRolesContributorJames M. Azam
Show author detailsRolesAuthorSam Abbott
Show author detailsRolesAuthorNikos Bosse
Show author detailsRolesContributorRobin Thompson
Joel Hellewell
Katharine Sherratt
Show author detailsRolesAuthorKatelyn Gostic
Show author detailsRolesAuthorJoe Hickson
Show author detailsRolesAuthorMichael DeWitt
Sophie Meakin
Show author detailsRolesContributorJames Munday
Show author detailsRolesContributorPaul Mee
Show author detailsRolesContributorPietro Monticone
Show author detailsRolesContributorLloyd Chapman
Show author detailsRolesContributorAndrew Johnson
Show author detailsRolesContributorKaitlyn Johnson
EpiForecasts
Show author detailsRolesAuthor
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- Imports18 packages
- Suggests11 packages
- Linking To6 packages