What does the R-package 'GGIR' do?

Raw Accelerometer Data Analysis

Vincent T van Hees, Jairo H Migueles, Severine Sabia, Matthew R Patterson, Zhou Fang, Joe Heywood, Joan Capdevila Pujol, Lena Kushleyeva, Mathilde Chen, Manasa Yerramalla, Patrick Bos, Taren Sanders, Chenxuan Zhao, Medical Research Council UK, Accelting, French National Research Agency

CRAN/E | GGIR

Installation

About

A tool to process and analyse data collected with wearable raw acceleration sensors as described in Migueles and colleagues (JMPB 2019), and van Hees and colleagues (JApplPhysiol 2014; PLoSONE 2015). The package has been developed and tested for binary data from 'GENEActiv' , binary (.gt3x) and .csv-export data from 'Actigraph' devices, and binary (.cwa) and .csv-export data from 'Axivity' . These devices are currently widely used in research on human daily physical activity. Further, the package can handle accelerometer data file from any other sensor brand providing that the data is stored in csv format. Also the package allows for external function embedding.

Citation	GGIR citation info
github.com/wadpac/GGIR/
groups.google.com/forum/#!forum/RpackageGGIR
wadpac.github.io/GGIR/
Bug report	File report

Key Metrics

Version	3.1-1
R	≥ 3.5
Published	2024-06-04 102 days ago
Needs compilation?	no
License	Apache License (== 2.0)
License	File
CRAN checks	GGIR results

Downloads

Yesterday	37 0%
Last 7 days	436 -7%
Last 30 days	2.095 +2%
Last 90 days	6.071 -10%
Last 365 days	24.808 +31%

Maintainer

Vincent T van Hees

[email protected]

Authors

Vincent T van Hees	aut / cre
Jairo H Migueles	aut
Severine Sabia	ctb
Matthew R Patterson	ctb
Zhou Fang	ctb
Joe Heywood	ctb
Joan Capdevila Pujol	ctb
Lena Kushleyeva	ctb
Mathilde Chen	ctb
Manasa Yerramalla	ctb
Patrick Bos	ctb
Taren Sanders	ctb
Chenxuan Zhao	ctb
Medical Research Council UK	cph / fnd
Accelting	cph / fnd
French National Research Agency	cph / fnd

Material

README
NEWS
Reference manual
Package source

In Views

Tracking

Vignettes

Published cut-points and how to use them in GGIR
Embedding external functions in GGIR
Accelerometer data processing with GGIR
GGIR configuration parameters
Household Co-Analysis
Day segment analyses with GGIR
Contributing
Get started: the GGIR R package
Installation of the GGIR R Package
How can I get service and support?
9. Circadian rhythms
1. What is GGIR
2. The GGIR pipeline
3. Data Quality Assurance
4. From Raw Data to Acceleration Metrics
5. Accounting for Study Protocol
6. How GGIR Deals with Invalid Data
7. Describing the Data Without Knowing Sleep
7. The 24-hour time use analysis
8. Physical behaviours analysis
Reading csv files with raw data in GGIR

macOS

r-release	arm64
r-oldrel	arm64
r-release	x86_64
r-oldrel	x86_64

Windows

r-devel	x86_64
r-release	x86_64
r-oldrel	x86_64

Old Sources

GGIR archive

Depends

stats
utils
R	≥ 3.5

Imports

data.table
foreach
doParallel
signal
zoo
unisensR
ineq
methods
psych
irr
lubridate
GGIRread
ActCR
read.gt3x

Suggests

testthat
covr
knitr
rmarkdown
actilifecounts
readxl

Reverse Imports

agcounts
mMARCH.AC
postGGIR