GenomicSig

Genomic signatures represent unique features within a species' DNA, enabling the differentiation of species and offering broad applications across various fields. This package provides essential tools for calculating these specific signatures, streamlining the process for researchers and offering a comprehensive and time-saving solution for genomic analysis.The amino acid contents are identified based on the work published by Sandberg et al. (2003) doi:10.1016/s0378-1119(03)00581-x and Xiao et al. (2015) doi:10.1093/bioinformatics/btv042. The Average Mutual Information Profiles (AMIP) values are calculated based on the work of Bauer et al. (2008) doi:10.1186/1471-2105-9-48. The Chaos Game Representation (CGR) plot visualization was done based on the work of Deschavanne et al. (1999) doi:10.1093/oxfordjournals.molbev.a026048 and Jeffrey et al. (1990) doi:10.1093/nar/18.8.2163. The GC content is calculated based on the work published by Nakabachi et al. (2006) doi:10.1126/science.1134196 and Barbu et al. (1956) https://pubmed.ncbi.nlm.nih.gov/13363015. The Oligonucleotide Frequency Derived Error Gradient (OFDEG) values are computed based on the work published by Saeed et al. (2009) doi:10.1186/1471-2164-10-S3-S10. The Relative Synonymous Codon Usage (RSCU) values are calculated based on the work published by Elek (2018) https://urn.nsk.hr/urn:nbn:hr:217:686131.

Last 30 days

This package has been downloaded 148 times in the last 30 days. Enough downloads to make a small wave in the niche community. The curiosity is spreading! The following heatmap shows the distribution of downloads per day. Yesterday, it was downloaded 3 times.

The following line graph shows the downloads per day. You can hover over the graph to see the exact number of downloads per day.

Last 365 days

This package has been downloaded 1,118 times in the last 365 days. That's enough downloads to impress a room full of undergrads. A commendable achievement indeed. The day with the most downloads was Sep 14, 2024 with 31 downloads.

The following line graph shows the downloads per day. You can hover over the graph to see the exact number of downloads per day.