GeoTcgaData

Processing various types of data on GEO and TCGA

CRAN Package

Gene Expression Omnibus(GEO) and The Cancer Genome Atlas (TCGA) provide us with a wealth of data, such as RNA-seq, DNA Methylation, SNP and Copy number variation data. It's easy to download data from TCGA using the gdc tool, but processing these data into a format suitable for bioinformatics analysis requires more work. This R package was developed to handle these data.

  • Version1.1.1.992
  • R version≥ 3.6.0
  • LicenseArtistic-2.0
  • Needs compilation?No
  • Languageen-US
  • Last release09/23/2022

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  • Depends1 package
  • Imports7 packages
  • Suggests16 packages