GillespieSSA2
Gillespie's Stochastic Simulation Algorithm for Impatient People
A fast, scalable, and versatile framework for simulating large systems with Gillespie's Stochastic Simulation Algorithm ('SSA'). This package is the spiritual successor to the 'GillespieSSA' package originally written by Mario Pineda-Krch. Benefits of this package include major speed improvements (>100x), easier to understand documentation, and many unit tests that try to ensure the package works as intended. Cannoodt and Saelens et al. (2021) doi:10.1038/s41467-021-24152-2.
- Version0.3.0
- R version≥ 3.3
- LicenseGPL (≥ 3)
- Needs compilation?Yes
- GillespieSSA2 citation info
- Last release01/23/2023
Documentation
- VignetteIntroduction to GillespieSSA2
- VignetteConverting from GillespieSSA to GillespieSSA2
- VignetteDecaying-Dimerization Reaction Set
- VignetteSIRS metapopulation model
- VignetteLinear Chain System
- VignettePearl-Verhulst Logistic Growth model
- VignetteLotka Predator-Prey model
- VignetteRadioactive Decay model
- VignetteRosenzweig-MacArthur Predator-Prey model
- VignetteKermack-McKendrick SIR model
- MaterialREADME
- MaterialNEWS
Team
Robrecht Cannoodt
MaintainerShow author detailsWouter Saelens
Insights
Last 30 days
This package has been downloaded 355 times in the last 30 days. More than a random curiosity, but not quite a blockbuster. Still, it's gaining traction! The following heatmap shows the distribution of downloads per day. Yesterday, it was downloaded 13 times.
The following line graph shows the downloads per day. You can hover over the graph to see the exact number of downloads per day.
Last 365 days
This package has been downloaded 4,720 times in the last 365 days. Consider this 'mid-tier influencer' status—if it were a TikTok, it would get a nod from nieces and nephews. The day with the most downloads was Sep 11, 2024 with 40 downloads.
The following line graph shows the downloads per day. You can hover over the graph to see the exact number of downloads per day.
Data provided by CRAN
Binaries
Dependencies
- Imports11 packages
- Suggests6 packages
- Linking To1 package
- Reverse Imports1 package