GillespieSSA2
Gillespie's Stochastic Simulation Algorithm for Impatient People
A fast, scalable, and versatile framework for simulating large systems with Gillespie's Stochastic Simulation Algorithm ('SSA'). This package is the spiritual successor to the 'GillespieSSA' package originally written by Mario Pineda-Krch. Benefits of this package include major speed improvements (>100x), easier to understand documentation, and many unit tests that try to ensure the package works as intended. Cannoodt and Saelens et al. (2021) doi:10.1038/s41467-021-24152-2.
- Version0.3.0
- R version≥ 3.3
- LicenseGPL (≥ 3)
- Needs compilation?Yes
- GillespieSSA2 citation info
- Last release01/23/2023
Documentation
- VignetteIntroduction to GillespieSSA2
- VignetteConverting from GillespieSSA to GillespieSSA2
- VignetteDecaying-Dimerization Reaction Set
- VignetteSIRS metapopulation model
- VignetteLinear Chain System
- VignettePearl-Verhulst Logistic Growth model
- VignetteLotka Predator-Prey model
- VignetteRadioactive Decay model
- VignetteRosenzweig-MacArthur Predator-Prey model
- VignetteKermack-McKendrick SIR model
- MaterialREADME
- MaterialNEWS
Team
Robrecht Cannoodt
MaintainerShow author detailsWouter Saelens
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Dependencies
- Imports11 packages
- Suggests6 packages
- Linking To1 package
- Reverse Imports1 package