IPCAPS

Iterative Pruning to Capture Population Structure

CRAN Package

An unsupervised clustering algorithm based on iterative pruning is for capturing population structure. This version supports ordinal data which can be applied directly to SNP data to identify fine-level population structure and it is built on the iterative pruning Principal Component Analysis ('ipPCA') algorithm as explained in Intarapanich et al. (2009) doi:10.1186/1471-2105-10-382. The 'IPCAPS' involves an iterative process using multiple splits based on multivariate Gaussian mixture modeling of principal components and 'Expectation-Maximization' clustering as explained in Lebret et al. (2015) doi:10.18637/jss.v067.i06. In each iteration, rough clusters and outliers are also identified using the function rubikclust() from the R package 'KRIS'.


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Insights

Last 30 days

This package has been downloaded 432 times in the last 30 days. Enough downloads to make a small wave in the niche community. The curiosity is spreading! The following heatmap shows the distribution of downloads per day. Yesterday, it was downloaded 9 times.

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0 downloadsMar 2, 2025
0 downloadsMar 3, 2025
51 downloadsMar 4, 2025
9 downloadsMar 5, 2025
4 downloadsMar 6, 2025
5 downloadsMar 7, 2025
41 downloadsMar 8, 2025
2 downloadsMar 9, 2025
4 downloadsMar 10, 2025
6 downloadsMar 11, 2025
2 downloadsMar 12, 2025
43 downloadsMar 13, 2025
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1 downloadsMar 16, 2025
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12 downloadsMar 20, 2025
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5 downloadsMar 22, 2025
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48 downloadsMar 24, 2025
2 downloadsMar 25, 2025
14 downloadsMar 26, 2025
4 downloadsMar 27, 2025
47 downloadsMar 28, 2025
1 downloadsMar 29, 2025
6 downloadsMar 30, 2025
1 downloadsMar 31, 2025
45 downloadsApr 1, 2025
9 downloadsApr 2, 2025
0 downloadsApr 3, 2025
0 downloadsApr 4, 2025
0 downloadsApr 5, 2025
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The following line graph shows the downloads per day. You can hover over the graph to see the exact number of downloads per day.

Last 365 days

This package has been downloaded 6,155 times in the last 365 days. Impressive! The kind of number that makes colleagues ask, 'How did you do it?' The day with the most downloads was Sep 11, 2024 with 58 downloads.

The following line graph shows the downloads per day. You can hover over the graph to see the exact number of downloads per day.

Data provided by CRAN


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Dependencies

  • Imports8 packages
  • Suggests1 package