Jacquard

Contains procedures to estimate the nine condensed Jacquard genetic identity coefficients (Jacquard, 1974) https://doi.org/10.1007%2F978-3-642-88415-3 by constrained least squares (Graffelman et al., 2024) https://doi.org/10.1101%2F2024.03.25.586682 and by the method of moments (Csuros, 2014) https://doi.org/10.1016%2Fj.tpb.2013.11.001. These procedures require previous estimation of the allele frequencies. Functions are supplied that estimate relationship parameters that derive from the Jacquard coefficients, such as individual inbreeding coefficients and kinship coefficients.

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