LUCIDus

LUCID with Multiple Omics Data

CRAN Package

An implementation of estimating the Latent Unknown Clusters By Integrating Multi-omics Data (LUCID) model (Peng (2019) <doi:10.1093/bioinformatics/btz667>). LUCID conducts integrated clustering using exposures, omics information (and outcome information as an option). This package implements three different integration strategies for multi-omics data analysis within the LUCID framework: LUCID early integration (the original LUCID model), LUCID in parallel (intermediate integration), and LUCID in serial (late integration). Automated model selection for each LUCID model is available to obtain the optimal number of latent clusters, and an integrated imputation approach is implemented to handle sporadic and list-wise missingness in multi-omics data. Lasso-type regularity for exposure and omics features were added. S3 methods for summary and plotting functions were fixed. Fixed minor bugs.


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Insights

Last 30 days

This package has been downloaded 296 times in the last 30 days. Now we're getting somewhere! Enough downloads to populate a lively group chat. The following heatmap shows the distribution of downloads per day. Yesterday, it was downloaded 3 times.

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14 downloadsFeb 16, 2025
16 downloadsFeb 17, 2025
5 downloadsFeb 18, 2025
26 downloadsFeb 19, 2025
32 downloadsFeb 20, 2025
8 downloadsFeb 21, 2025
6 downloadsFeb 22, 2025
2 downloadsFeb 23, 2025
5 downloadsFeb 24, 2025
6 downloadsFeb 25, 2025
26 downloadsFeb 26, 2025
2 downloadsFeb 27, 2025
2 downloadsFeb 28, 2025
7 downloadsMar 1, 2025
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31 downloadsMar 5, 2025
6 downloadsMar 6, 2025
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0 downloadsMar 8, 2025
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15 downloadsMar 10, 2025
6 downloadsMar 11, 2025
3 downloadsMar 12, 2025
2 downloadsMar 13, 2025
5 downloadsMar 14, 2025
27 downloadsMar 15, 2025
2 downloadsMar 16, 2025
3 downloadsMar 17, 2025
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0 downloadsMar 21, 2025
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The following line graph shows the downloads per day. You can hover over the graph to see the exact number of downloads per day.

Last 365 days

This package has been downloaded 4,140 times in the last 365 days. Consider this 'mid-tier influencer' status—if it were a TikTok, it would get a nod from nieces and nephews. The day with the most downloads was Sep 26, 2024 with 65 downloads.

The following line graph shows the downloads per day. You can hover over the graph to see the exact number of downloads per day.

Data provided by CRAN


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Dependencies

  • Imports8 packages
  • Suggests1 package