MAPITR
MArginal ePIstasis Test for Regions
A genetic analysis tool and variance component model for identifying marginal epistasis between pathways and the rest of the genome. 'MAPITR' uses as input a matrix of genotypes, a vector of phenotypes, and a list of pathways. 'MAPITR' then iteratively tests each pathway for epistasis between any variants within the pathway versus any variants remaining in the rest of the genome. 'MAPITR' returns results in the form of p-values for every pathway indicating whether the null model of there being no epistatic interactions between a pathway and the rest of the genome can be rejected.
- Version1.1.2
- R version≥ 3.3.0
- LicenseMIT
- Needs compilation?Yes
- Last release09/28/2020
Documentation
Team
Michael Turchin
Peter Carbonetto
Show author detailsRolesContributorGregory Darnell
Lorin Crawford
Sohini Ramachandran
Insights
Last 30 days
This package has been downloaded 196 times in the last 30 days. Now we're getting somewhere! Enough downloads to populate a lively group chat. The following heatmap shows the distribution of downloads per day. Yesterday, it was downloaded 13 times.
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Last 365 days
This package has been downloaded 2,315 times in the last 365 days. Now we’re talking! This work is officially 'heard of in academic circles', just like those wild research papers on synthetic bananas. The day with the most downloads was Sep 11, 2024 with 31 downloads.
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Dependencies
- Imports3 packages
- Suggests3 packages
- Linking To2 packages