CRAN/E | MetaIntegrator

MetaIntegrator

Meta-Analysis of Gene Expression Data

Installation

About

A pipeline for the meta-analysis of gene expression data. We have assembled several analysis and plot functions to perform integrated multi-cohort analysis of gene expression data (meta- analysis). Methodology described in: .

Citation MetaIntegrator citation info
biorxiv.org/content/early/2016/08/25/071514

Key Metrics

Version 2.1.3
R ≥ 3.6
Published 2020-02-26 1696 days ago
Needs compilation? no
License LGPL-2
License LGPL-2.1
License LGPL-3
CRAN checks MetaIntegrator results

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Maintainer

Maintainer

Aditya M. Rao

[email protected]

Authors

Winston A. Haynes
Francesco Vallania
Aurelie Tomczak
Timothy Sweeney
Erika Bongen
Aditya M. Rao
Purvesh Khatri

Material

README
NEWS
Reference manual
Package source

In Views

MetaAnalysis

Vignettes

Analysis of gene expression data
MetaIntegrator Real Example on GEO Data

macOS

r-release

arm64

r-oldrel

arm64

r-release

x86_64

r-oldrel

x86_64

Windows

r-devel

x86_64

r-release

x86_64

r-oldrel

x86_64

Old Sources

MetaIntegrator archive

Depends

R ≥ 3.6

Imports

BiocManager
rmeta
multtest
ggplot2
parallel
Rmisc
gplots
Biobase
RMySQL
DBI
stringr
preprocessCore
GEOquery
GEOmetadb
RSQLite
data.table
ggpubr
ROCR
zoo
pracma
COCONUT
Metrics
manhattanly
DT
pheatmap
plyr
boot
dplyr
reshape2
rmarkdown
AnnotationDbi
HGNChelper
magrittr
readr
plotly
httpuv

Suggests

BiocStyle
knitr
RUnit
BiocGenerics
snplist
magick