MiRKAT
Microbiome Regression-Based Kernel Association Tests
Test for overall association between microbiome composition data and phenotypes via phylogenetic kernels. The phenotype can be univariate continuous or binary (Zhao et al. (2015) doi:10.1016/j.ajhg.2015.04.003), survival outcomes (Plantinga et al. (2017) doi:10.1186/s40168-017-0239-9), multivariate (Zhan et al. (2017) doi:10.1002/gepi.22030) and structured phenotypes (Zhan et al. (2017) doi:10.1111/biom.12684). The package can also use robust regression (unpublished work) and integrated quantile regression (Wang et al. (2021) doi:10.1093/bioinformatics/btab668). In each case, the microbiome community effect is modeled nonparametrically through a kernel function, which can incorporate phylogenetic tree information.
- Version1.2.3
- R version≥ 3.1.0
- LicenseGPL-2
- LicenseGPL-3
- Needs compilation?No
- Last release02/17/2023
Documentation
Team
Anna Plantinga
Jun Chen
Show author detailsRolesAuthorNi Zhao
Show author detailsRolesAuthor, ContributorNehemiah Wilson
Show author detailsRolesAuthor, ContributorHaotian Zheng
Show author detailsRolesAuthor, ContributorTianying Wang
Show author detailsRolesAuthor, ContributorXiang Zhan
Show author detailsRolesAuthor, ContributorMichael Wu
Show author detailsRolesAuthor
Insights
Last 30 days
This package has been downloaded 306 times in the last 30 days. Now we're getting somewhere! Enough downloads to populate a lively group chat. The following heatmap shows the distribution of downloads per day. Yesterday, it was downloaded 9 times.
The following line graph shows the downloads per day. You can hover over the graph to see the exact number of downloads per day.
Last 365 days
This package has been downloaded 4,384 times in the last 365 days. Consider this 'mid-tier influencer' status—if it were a TikTok, it would get a nod from nieces and nephews. The day with the most downloads was Sep 11, 2024 with 62 downloads.
The following line graph shows the downloads per day. You can hover over the graph to see the exact number of downloads per day.
Data provided by CRAN
Binaries
Dependencies
- Imports10 packages
- Suggests5 packages