MiRKAT

Test for overall association between microbiome composition data and phenotypes via phylogenetic kernels. The phenotype can be univariate continuous or binary (Zhao et al. (2015) doi:10.1016/j.ajhg.2015.04.003), survival outcomes (Plantinga et al. (2017) doi:10.1186/s40168-017-0239-9), multivariate (Zhan et al. (2017) doi:10.1002/gepi.22030) and structured phenotypes (Zhan et al. (2017) doi:10.1111/biom.12684). The package can also use robust regression (unpublished work) and integrated quantile regression (Wang et al. (2021) doi:10.1093/bioinformatics/btab668). In each case, the microbiome community effect is modeled nonparametrically through a kernel function, which can incorporate phylogenetic tree information.

Last 30 days

This package has been downloaded 274 times in the last 30 days. Now we're getting somewhere! Enough downloads to populate a lively group chat. The following heatmap shows the distribution of downloads per day. Yesterday, it was downloaded 6 times.

The following line graph shows the downloads per day. You can hover over the graph to see the exact number of downloads per day.

Last 365 days

This package has been downloaded 4,365 times in the last 365 days. Now we’re talking! This work is officially 'heard of in academic circles', just like those wild research papers on synthetic bananas. The day with the most downloads was Sep 11, 2024 with 62 downloads.

The following line graph shows the downloads per day. You can hover over the graph to see the exact number of downloads per day.