PCMBaseCpp

Fast Likelihood Calculation for Phylogenetic Comparative Models

CRAN Package

Provides a C++ backend for multivariate phylogenetic comparative models implemented in the R-package 'PCMBase'. Can be used in combination with 'PCMBase' to enable fast and parallel likelihood calculation. Implements the pruning likelihood calculation algorithm described in Mitov et al. (2018) doi:10.48550/arXiv.1809.09014. Uses the 'SPLITT' C++ library for parallel tree traversal described in Mitov and Stadler (2018) doi:10.1111/2041-210X.13136.

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