PRECAST

Embedding and Clustering with Alignment for Spatial Datasets

CRAN Package

An efficient data integration method is provided for multiple spatial transcriptomics data with non-cluster-relevant effects such as the complex batch effects. It unifies spatial factor analysis simultaneously with spatial clustering and embedding alignment, requiring only partially shared cell/domain clusters across datasets. More details can be referred to Wei Liu, et al. (2023) .

  • Version1.6.5
  • R version≥ 4.0.0
  • LicenseGPL-3
  • Needs compilation?Yes
  • Last release03/19/2024

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  • Depends3 packages
  • Imports22 packages
  • Suggests2 packages
  • Linking To2 packages
  • Reverse Imports1 package