PeakSegDP

Dynamic Programming Algorithm for Peak Detection in ChIP-Seq Data

CRAN Package

A quadratic time dynamic programming algorithm can be used to compute an approximate solution to the problem of finding the most likely changepoints with respect to the Poisson likelihood, subject to a constraint on the number of segments, and the changes which must alternate: up, down, up, down, etc. For more info read "PeakSeg: constrained optimal segmentation and supervised penalty learning for peak detection in count data" by TD Hocking et al, proceedings of ICML2015.

  • Version2024.1.24
  • R version≥ 2.10
  • LicenseGPL-3
  • Needs compilation?Yes
  • Last release01/24/2024

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