PeakSegDP

Dynamic Programming Algorithm for Peak Detection in ChIP-Seq Data

CRAN Package

A quadratic time dynamic programming algorithm can be used to compute an approximate solution to the problem of finding the most likely changepoints with respect to the Poisson likelihood, subject to a constraint on the number of segments, and the changes which must alternate: up, down, up, down, etc. For more info read http://proceedings.mlr.press/v37/hocking15.html "PeakSeg: constrained optimal segmentation and supervised penalty learning for peak detection in count data" by TD Hocking et al, proceedings of ICML2015.

  • Version2024.1.24
  • R version≥ 2.10
  • LicenseGPL-3
  • Needs compilation?Yes
  • Last release01/24/2024

Documentation


Team


Insights

Last 30 days

This package has been downloaded 520 times in the last 30 days. Not bad! The download count is somewhere between 'small-town buzz' and 'moderate academic conference'. The following heatmap shows the distribution of downloads per day. Yesterday, it was downloaded 12 times.

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Sat
0 downloadsMar 2, 2025
0 downloadsMar 3, 2025
53 downloadsMar 4, 2025
8 downloadsMar 5, 2025
6 downloadsMar 6, 2025
4 downloadsMar 7, 2025
48 downloadsMar 8, 2025
4 downloadsMar 9, 2025
4 downloadsMar 10, 2025
11 downloadsMar 11, 2025
6 downloadsMar 12, 2025
50 downloadsMar 13, 2025
5 downloadsMar 14, 2025
9 downloadsMar 15, 2025
4 downloadsMar 16, 2025
26 downloadsMar 17, 2025
31 downloadsMar 18, 2025
4 downloadsMar 19, 2025
10 downloadsMar 20, 2025
11 downloadsMar 21, 2025
5 downloadsMar 22, 2025
4 downloadsMar 23, 2025
58 downloadsMar 24, 2025
6 downloadsMar 25, 2025
3 downloadsMar 26, 2025
8 downloadsMar 27, 2025
62 downloadsMar 28, 2025
3 downloadsMar 29, 2025
4 downloadsMar 30, 2025
7 downloadsMar 31, 2025
54 downloadsApr 1, 2025
12 downloadsApr 2, 2025
0 downloadsApr 3, 2025
0 downloadsApr 4, 2025
0 downloadsApr 5, 2025
3
62

The following line graph shows the downloads per day. You can hover over the graph to see the exact number of downloads per day.

Last 365 days

This package has been downloaded 7,879 times in the last 365 days. Impressive! The kind of number that makes colleagues ask, 'How did you do it?' The day with the most downloads was Jul 21, 2024 with 75 downloads.

The following line graph shows the downloads per day. You can hover over the graph to see the exact number of downloads per day.

Data provided by CRAN


Binaries


Dependencies

  • Suggests3 packages
  • Reverse Suggests1 package