QuICSeedR

Analyze Data for Fluorophore-Assisted Seed Amplification Assays

CRAN Package

A toolkit for analysis and visualization of data from fluorophore-assisted seed amplification assays, such as Real-Time Quaking-Induced Conversion (RT-QuIC) and Fluorophore-Assisted Protein Misfolding Cyclic Amplification (PMCA). 'QuICSeedR' addresses limitations in existing software by automating data processing, supporting large-scale analysis, and enabling comparative studies of analysis methods. It incorporates methods described in Henderson et al. (2015) doi:10.1099/vir.0.069906-0, Li et al. (2020) doi:10.1038/s41598-021-96127-8, Rowden et al. (2023) doi:10.3390/pathogens12020309, Haley et al. (2013) doi:10.1371/journal.pone.0081488, and Mair and Wilcox (2020) doi:10.3758/s13428-019-01246-w. Please refer to the original publications for details.

  • Version0.1.2
  • R versionunknown
  • LicenseGPL-3
  • Needs compilation?No
  • Last release09/02/2024

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  • Imports8 packages
  • Suggests1 package