CRAN/E | RcmdrPlugin.BiclustGUI

RcmdrPlugin.BiclustGUI

'Rcmdr' Plug-in GUI for Biclustering

Installation

About

A plug-in for R Commander ('Rcmdr'). The package is a Graphical User Interface (GUI) in which several biclustering methods can be executed, followed by diagnostics and plots of the results. Further, the GUI also has the possibility to connect the methods to more general diagnostic packages for biclustering. Biclustering methods from 'biclust', 'fabia', 's4vd', 'iBBiG', 'isa2', 'BiBitR', 'rqubic' and 'BicARE' are implemented. Additionally, 'superbiclust' and 'BcDiag' are also implemented to be able to further investigate results. The GUI also provides a couple of extra utilities to export, save, search through and plot the results. 'RcmdrPlugin.BiclustGUI' also provides a very specific framework for biclustering in which new methods, diagnostics and plots can be added. Scripts were prepared so that R-package developers can freely design their own dialogs in the GUI which can then be added by the maintainer of 'RcmdrPlugin.BiclustGUI'. These scripts do not required any knowledge of 'tcltk' and 'Rcmdr' and are easy to fill in. (Note: rqubic currently requires manual installation through BiocManager::install('rqubic').)

Key Metrics

Version 1.1.3.1
Published 2022-05-23 757 days ago
Needs compilation? no
License GPL-3
CRAN checks RcmdrPlugin.BiclustGUI results

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Maintainer

Maintainer

De Troyer Ewoud

Authors

De Troyer Ewoud
Otava Martin

Material

README
NEWS
Reference manual
Package source

Vignettes

BiclustGUI Full Guide

macOS

r-release

arm64

r-oldrel

arm64

r-release

x86_64

r-oldrel

x86_64

Windows

r-devel

x86_64

r-release

x86_64

r-oldrel

x86_64

Old Sources

RcmdrPlugin.BiclustGUI archive

Depends

biclust
fabia
iBBiG
superbiclust ≥ 1.1
BcDiag ≥ 1.0.10
BicARE
s4vd
BiBitR ≥ 0.3.1

Imports

Rcmdr
tcltk
gplots
grDevices
graphics
methods
utils
viridis

Suggests

knitr
rqubic
BiocManager