Installation
About
An optimized method for identifying mutually exclusive genomic events. Its main contribution is a statistical analysis based on the Poisson-Binomial distribution that takes into account that some samples are more mutated than others. See [Canisius, Sander, John WM Martens, and Lodewyk FA Wessels. (2016) "A novel independence test for somatic alterations in cancer shows that biology drives mutual exclusivity but chance explains most co-occurrence." Genome biology 17.1 : 1-17. doi:10.1186/s13059-016-1114-x]. The mutations matrices are sparse matrices. The method developed takes advantage of the advantages of this type of matrix to save time and computing resources.
Citation | Rediscover citation info |
Key Metrics
Downloads
Yesterday | 10 0% |
Last 7 days | 94 +36% |
Last 30 days | 320 -2% |
Last 90 days | 1.001 -3% |
Last 365 days | 4.203 +29% |
Maintainer
Maintainer | Juan A. Ferrer-Bonsoms |