CRAN/E | Rgff

Rgff

R Utilities for GFF Files

Installation

About

R utilities for gff files, either general feature format (GFF3) or gene transfer format (GTF) formatted files. This package includes functions for producing summary stats, check for consistency and sorting errors, conversion from GTF to GFF3 format, file sorting, visualization and plotting of feature hierarchy, and exporting user defined feature subsets to SAF format. This tool was developed by the BioinfoGP core facility at CNB-CSIC.

Key Metrics

Version 0.1.6
Published 2022-09-30 627 days ago
Needs compilation? no
License GPL (≥ 3)
CRAN checks Rgff results

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Maintainer

Maintainer

Juan Antonio Garcia-Martin

Authors

Juan Antonio Garcia-Martin

cre / aut

Juan Carlos Oliveros

aut / ctb

Rafael Torres-Perez

aut / ctb

Material

NEWS
Reference manual
Package source

Vignettes

Using Rgff

macOS

r-release

arm64

r-oldrel

arm64

r-release

x86_64

r-oldrel

x86_64

Windows

r-devel

x86_64

r-release

x86_64

r-oldrel

x86_64

Old Sources

Rgff archive

Imports

withr ≥ 2.4.3
rlang ≥ 0.4.12
stringi ≥ 1.7.6
data.tree ≥ 1.0.0
tidyr ≥ 1.1.4
tibble ≥ 3.1.6
dplyr ≥ 1.0.7
RJSONIO ≥ 1.3-1.6
magrittr ≥ 2.0.1

Suggests

DiagrammeR ≥ 1.0.6.1
DiagrammeRsvg ≥ 0.1
rsvg ≥2.2.0
rmarkdown ≥ 2.11
knitr ≥ 1.36
GenomicRanges ≥1.46.1
rtracklayer ≥ 1.54.0
S4Vectors ≥ 0.32.3