Rtropical

Data Analysis Tools over Space of Phylogenetic Trees Using Tropical Geometry

CRAN Package

Process phylogenetic trees with tropical support vector machine and principal component analysis defined with tropical geometry. Details about tropical support vector machine are available in : Tang, X., Wang, H. & Yoshida, R. (2020) doi:10.48550/arXiv.2003.00677. Details about tropical principle component analysis are available in : Page, R., Yoshida, R. & Zhang L. (2020) doi:10.1093/bioinformatics/btaa564 and Yoshida, R., Zhang, L. & Zhang, X. (2019) doi:10.1007/s11538-018-0493-4.


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