CRAN/E | Rtropical

Rtropical

Data Analysis Tools over Space of Phylogenetic Trees Using Tropical Geometry

Installation

About

Process phylogenetic trees with tropical support vector machine and principal component analysis defined with tropical geometry. Details about tropical support vector machine are available in : Tang, X., Wang, H. & Yoshida, R. (2020) . Details about tropical principle component analysis are available in : Page, R., Yoshida, R. & Zhang L. (2020) doi:10.1093/bioinformatics/btaa564 and Yoshida, R., Zhang, L. & Zhang, X. (2019) doi:10.1007/s11538-018-0493-4.

github.com/HoujieWang/Rtropical

Key Metrics

Version 1.2.1
R ≥ 3.5.0
Published 2021-11-09 951 days ago
Needs compilation? no
License GPL-3
CRAN checks Rtropical results

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Maintainer

Maintainer

Houjie Wang

Authors

Houjie Wang

aut / cre

Kaizhang Wang

aut

Grady Weyenberg

aut

Xiaoxian Tang

aut

Ruriko Yoshida

aut

Material

README
NEWS
Reference manual
Package source

Vignettes

usage

macOS

r-release

arm64

r-oldrel

arm64

r-release

x86_64

r-oldrel

x86_64

Windows

r-devel

x86_64

r-release

x86_64

r-oldrel

x86_64

Depends

R ≥ 3.5.0

Imports

ape
lpSolve
lpSolveAPI
parallel
Rfast
RcppAlgos
caret

Suggests

rmarkdown
knitr
e1071
testthat ≥ 3.0.0