CRAN/E | SCINA

SCINA

A Semi-Supervised Category Identification and Assignment Tool

Installation

About

An automatic cell type detection and assignment algorithm for single cell RNA-Seq and Cytof/FACS data. 'SCINA' is capable of assigning cell type identities to a pool of cells profiled by scRNA-Seq or Cytof/FACS data with prior knowledge of markers, such as genes and protein symbols that are highly or lowly expressed in each category. See Zhang Z, et al (2019) doi:10.3390/genes10070531 for more details.

lce.biohpc.swmed.edu/scina/ github.com/jcao89757/SCINA
lce.biohpc.swmed.edu/scina/ github.com/jcao89757/SCINA

Key Metrics

Version 1.2.0
R ≥ 2.15.0
Published 2019-07-18 1792 days ago
Needs compilation? no
License GPL-2
CRAN checks SCINA results

Downloads

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Maintainer

Maintainer

Ze Zhang

Authors

Ze Zhang

Material

NEWS
Reference manual
Package source

macOS

r-release

arm64

r-oldrel

arm64

r-release

x86_64

r-oldrel

x86_64

Windows

r-devel

x86_64

r-release

x86_64

r-oldrel

x86_64

Old Sources

SCINA archive

Depends

R ≥ 2.15.0
MASS
gplots