CRAN/E | SCORPIUS

SCORPIUS

Inferring Developmental Chronologies from Single-Cell RNA Sequencing Data

Installation

About

An accurate and easy tool for performing linear trajectory inference on single cells using single-cell RNA sequencing data. In addition, SCORPIUS provides functions for discovering the most important genes with respect to the reconstructed trajectory, as well as nice visualisation tools. Cannoodt et al. (2016) doi:10.1101/079509.

Citation SCORPIUS citation info
github.com/rcannood/SCORPIUS
Bug report File report

Key Metrics

Version 1.0.8
R ≥ 3.5.0
Published 2021-06-09 1100 days ago
Needs compilation? no
License GPL-3
CRAN checks SCORPIUS results

Downloads

Yesterday 5
Last 7 days 28 -70%
Last 30 days 310 -25%
Last 90 days 1.004 -22%
Last 365 days 4.405 +5%

Maintainer

Maintainer

Robrecht Cannoodt

Authors

Robrecht Cannoodt

aut / cre

(rcannood)

Wouter Saelens

ctb

(zouter)

Material

README
NEWS
Reference manual
Package source

Vignettes

Investigating dendritic cell maturation in dendritic cell progenitors
Trajectory inference from simulated data
Running SCOPIUS on a Seurat object

macOS

r-release

arm64

r-oldrel

arm64

r-release

x86_64

r-oldrel

x86_64

Windows

r-devel

x86_64

r-release

x86_64

r-oldrel

x86_64

Old Sources

SCORPIUS archive

Depends

R ≥ 3.5.0

Imports

dplyr
dynutils ≥ 1.0.3
dynwrap
grDevices
ggplot2 ≥2.0
lmds
MASS
Matrix
mclust
methods
pbapply
pheatmap
princurve ≥ 2.1.4
purrr
ranger
RANN
RColorBrewer
reshape2
stats
tidyr
TSP

Suggests

covr
knitr
rmarkdown
R.rsp
testthat ≥ 2.1.0