CRAN/E | SCRIP

SCRIP

An Accurate Simulator for Single-Cell RNA Sequencing Data

Installation

About

We provide a comprehensive scheme that is capable of simulating Single Cell RNA Sequencing data for various parameters of Biological Coefficient of Variation, busting kinetics, differential expression (DE), cell or sample groups, cell trajectory, batch effect and other experimental designs. 'SCRIP' proposed and compared two frameworks with Gamma-Poisson and Beta-Gamma-Poisson models for simulating Single Cell RNA Sequencing data. Other reference is available in Zappia et al. (2017) .

github.com/thecailab/SCRIP

Key Metrics

Version 1.0.0
R ≥ 4.0
Published 2021-11-19 937 days ago
Needs compilation? no
License GPL-3
CRAN checks SCRIP results
Language en-GB

Downloads

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Maintainer

Maintainer

Fei Qin

Authors

Fei Qin

aut / cre / cph

Material

Reference manual
Package source

Vignettes

SCRIPsimu

macOS

r-release

arm64

r-oldrel

arm64

r-release

x86_64

r-oldrel

x86_64

Windows

r-devel

x86_64

r-release

x86_64

r-oldrel

x86_64

Depends

R ≥ 4.0

Imports

splatter ≥ 1.16.1
S4Vectors ≥ 0.30.0
SummarizedExperiment ≥ 1.22.0
SingleCellExperiment ≥1.14.1
edgeR ≥ 3.34.0
methods
stats
mgcv
knitr
BiocManager
BiocGenerics
Seurat
crayon
fitdistrplus
checkmate ≥ 2.0.0

Suggests

rmarkdown
testthat ≥ 3.0.0