CRAN/E | SCpubr

SCpubr

Generate Publication Ready Visualizations of Single Cell Transcriptomics Data

Installation

About

A system that provides a streamlined way of generating publication ready plots for known Single-Cell transcriptomics data in a “publication ready” format. This is, the goal is to automatically generate plots with the highest quality possible, that can be used right away or with minimal modifications for a research article.

Citation SCpubr citation info
github.com/enblacar/SCpubr/
enblacar.github.io/SCpubr-book/
Bug report File report

Key Metrics

Version 2.0.2
R ≥ 4.0.0
Published 2023-10-11 250 days ago
Needs compilation? no
License GPL-3
CRAN checks SCpubr results

Downloads

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Maintainer

Maintainer

Enrique Blanco-Carmona

Authors

Enrique Blanco-Carmona

cre / aut

Material

README
NEWS
Reference manual
Package source

Vignettes

reference_manual

macOS

r-release

arm64

r-oldrel

arm64

r-release

x86_64

r-oldrel

x86_64

Windows

r-devel

x86_64

r-release

x86_64

r-oldrel

x86_64

Old Sources

SCpubr archive

Depends

R ≥ 4.0.0

Suggests

AnnotationDbi
assertthat
AUCell
circlize
cli
cluster
clusterProfiler
colorspace
ComplexHeatmap
covr
decoupleR
dplyr ≥ 1.1.0
enrichplot
forcats
ggalluvial
ggbeeswarm
ggdist
ggExtra
ggh4x
ggnewscale
ggplot2 ≥ 3.4.0
ggplotify
ggrastr
ggrepel
ggridges
ggsignif
graphics
infercnv
knitr
labeling
magrittr
MASS
Matrix
methods
Nebulosa
org.Hs.eg.db
patchwork
pheatmap
plyr
purrr
qpdf
RColorBrewer
rjags
rlang
rmarkdown
scales
scattermore
Seurat
SeuratObject
sf
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