SILGGM

Statistical Inference of Large-Scale Gaussian Graphical Model in Gene Networks

CRAN Package

Provides a general framework to perform statistical inference of each gene pair and global inference of whole-scale gene pairs in gene networks using the well known Gaussian graphical model (GGM) in a time-efficient manner. We focus on the high-dimensional settings where p (the number of genes) is allowed to be far larger than n (the number of subjects). Four main approaches are supported in this package: (1) the bivariate nodewise scaled Lasso Ren et al (2015) (2) the de-sparsified nodewise scaled Lasso Jankova and van de Geer (2017) (3) the de-sparsified graphical Lasso Jankova and van de Geer (2015) (4) the GGM estimation with false discovery rate control (FDR) using scaled Lasso or Lasso Liu (2013). Windows users should install 'Rtools' before the installation of this package.


Team


Insights

Last 30 days

This package has been downloaded 171 times in the last 30 days. Enough downloads to make a small wave in the niche community. The curiosity is spreading! The following heatmap shows the distribution of downloads per day. Yesterday, it was downloaded 3 times.

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0 downloadsFeb 9, 2025
0 downloadsFeb 10, 2025
0 downloadsFeb 11, 2025
0 downloadsFeb 12, 2025
8 downloadsFeb 13, 2025
8 downloadsFeb 14, 2025
5 downloadsFeb 15, 2025
2 downloadsFeb 16, 2025
4 downloadsFeb 17, 2025
6 downloadsFeb 18, 2025
4 downloadsFeb 19, 2025
5 downloadsFeb 20, 2025
6 downloadsFeb 21, 2025
11 downloadsFeb 22, 2025
5 downloadsFeb 23, 2025
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10 downloadsFeb 25, 2025
3 downloadsFeb 26, 2025
1 downloadsFeb 27, 2025
5 downloadsFeb 28, 2025
3 downloadsMar 1, 2025
13 downloadsMar 2, 2025
5 downloadsMar 3, 2025
4 downloadsMar 4, 2025
6 downloadsMar 5, 2025
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2 downloadsMar 8, 2025
1 downloadsMar 9, 2025
5 downloadsMar 10, 2025
12 downloadsMar 11, 2025
11 downloadsMar 12, 2025
5 downloadsMar 13, 2025
3 downloadsMar 14, 2025
0 downloadsMar 15, 2025
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The following line graph shows the downloads per day. You can hover over the graph to see the exact number of downloads per day.

Last 365 days

This package has been downloaded 1,945 times in the last 365 days. Consider this 'mid-tier influencer' status—if it were a TikTok, it would get a nod from nieces and nephews. The day with the most downloads was Sep 11, 2024 with 24 downloads.

The following line graph shows the downloads per day. You can hover over the graph to see the exact number of downloads per day.

Data provided by CRAN


Binaries


Dependencies

  • Depends1 package
  • Imports3 packages
  • Linking To1 package
  • Reverse Imports1 package