CRAN/E | SIMplyBee

SIMplyBee

'AlphaSimR' Extension for Simulating Honeybee Populations and Breeding Programmes

Installation

About

An extension of the 'AlphaSimR' package () for stochastic simulations of honeybee populations and breeding programmes. 'SIMplyBee' enables simulation of individual bees that form a colony, which includes a queen, fathers (drones the queen mated with), virgin queens, workers, and drones. Multiple colony can be merged into a population of colonies, such as an apiary or a whole country of colonies. Functions enable operations on castes, colony, or colonies, to ease 'R' scripting of whole populations. All 'AlphaSimR' functionality with respect to genomes and genetic and phenotype values is available and further extended for honeybees, including haplo-diploidy, complementary sex determiner locus, colony events (swarming, supersedure, etc.), and colony phenotype values.

github.com/HighlanderLab/SIMplyBee

Key Metrics

Version 0.3.0
R ≥ 3.3.0
Published 2022-12-15 546 days ago
Needs compilation? no
License MIT
License File
CRAN checks SIMplyBee results

Downloads

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Maintainer

Maintainer

Jana Obšteter

Authors

Jana Obšteter

aut / cre

Laura Strachan

aut

Jernej Bubnič

aut

Gregor Gorjanc

aut

Material

README
NEWS
Reference manual
Package source

Vignettes

Honeybee biology
Multiple colonies
ColonyEvents
Crossing
Genomics
Sampling functions
FAQ

macOS

r-release

arm64

r-oldrel

arm64

r-release

x86_64

r-oldrel

x86_64

Windows

r-develnot available

x86_64

r-releasenot available

x86_64

r-oldrelnot available

x86_64

Depends

R ≥ 3.3.0
AlphaSimR ≥ 1.3.2

Imports

methods
R6
stats
utils
extraDistr ≥ 1.9.1

Suggests

rmarkdown
knitr
ggplot2
testthat ≥ 3.0.0
Matrix