CRAN/E | SIPmg

SIPmg

Statistical Analysis to Identify Isotope Incorporating MAGs

Installation

About

Statistical analysis as part of a stable isotope probing (SIP) metagenomics study to identify isotope incorporating taxa recovered as metagenome-assembled genomes (MAGs). Helpful reading and a vignette in bookdown format is provided on the package site .

zielslab.github.io/SIPmg.github.io/
Bug report File report

Key Metrics

Version 1.4.1
R ≥ 3.5.0
Published 2023-02-22 477 days ago
Needs compilation? yes
License GPL-2
CRAN checks SIPmg results

Downloads

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Maintainer

Maintainer

Pranav Sampara

Authors

Pranav Sampara

aut / cre

Kate Waring

ctb

Ryan Ziels

aut

Material

Reference manual
Package source

Vignettes

SIPmg-vignette

macOS

r-release

arm64

r-oldrel

arm64

r-release

x86_64

r-oldrel

x86_64

Windows

r-devel

x86_64

r-release

x86_64

r-oldrel

x86_64

Old Sources

SIPmg archive

Depends

R ≥ 3.5.0

Imports

HTSSIP
dplyr
lazyeval
phyloseq
plyr
stringr
tibble
tidyr
magrittr
ggplot2
ggpubr
purrr
rlang
MASS
DESeq2
data.table
utils

Suggests

rmarkdown
knitr
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readr
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