CRAN/E | SITH

SITH

A Spatial Model of Intra-Tumor Heterogeneity

Installation

About

Implements a three-dimensional stochastic model of cancer growth and mutation similar to the one described in Waclaw et al. (2015) doi:10.1038/nature14971. Allows for interactive 3D visualizations of the simulated tumor. Provides a comprehensive summary of the spatial distribution of mutants within the tumor. Contains functions which create synthetic sequencing datasets from the generated tumor.

github.com/phillipnicol/SITH
Bug report File report

Key Metrics

Version 1.1.0
R ≥ 3.6.0
Published 2021-01-05 1260 days ago
Needs compilation? yes
License GPL-2
License GPL-3
CRAN checks SITH results

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Maintainer

Maintainer

Phillip B. Nicol

Authors

Phillip B. Nicol

Material

NEWS
Reference manual
Package source

Vignettes

Simulating spatial tumor growth with SITH

macOS

r-release

arm64

r-oldrel

arm64

r-release

x86_64

r-oldrel

x86_64

Windows

r-devel

x86_64

r-release

x86_64

r-oldrel

x86_64

Old Sources

SITH archive

Depends

R ≥ 3.6.0

Imports

Rcpp ≥ 1.0.4
scatterplot3d
stats
graphics
grDevices

Suggests

rgl
igraph
knitr
rmarkdown
testthat

LinkingTo

Rcpp