SITH

A Spatial Model of Intra-Tumor Heterogeneity

CRAN Package

Implements a three-dimensional stochastic model of cancer growth and mutation similar to the one described in Waclaw et al. (2015) doi:10.1038/nature14971. Allows for interactive 3D visualizations of the simulated tumor. Provides a comprehensive summary of the spatial distribution of mutants within the tumor. Contains functions which create synthetic sequencing datasets from the generated tumor.


Documentation


Team


Insights

Last 30 days

This package has been downloaded 135 times in the last 30 days. Now we're getting somewhere! Enough downloads to populate a lively group chat. The following heatmap shows the distribution of downloads per day. Yesterday, it was downloaded 6 times.

Sun
Mon
Tue
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Sat
0 downloadsMar 2, 2025
0 downloadsMar 3, 2025
6 downloadsMar 4, 2025
6 downloadsMar 5, 2025
3 downloadsMar 6, 2025
4 downloadsMar 7, 2025
0 downloadsMar 8, 2025
1 downloadsMar 9, 2025
2 downloadsMar 10, 2025
8 downloadsMar 11, 2025
5 downloadsMar 12, 2025
9 downloadsMar 13, 2025
2 downloadsMar 14, 2025
7 downloadsMar 15, 2025
3 downloadsMar 16, 2025
0 downloadsMar 17, 2025
7 downloadsMar 18, 2025
7 downloadsMar 19, 2025
8 downloadsMar 20, 2025
8 downloadsMar 21, 2025
6 downloadsMar 22, 2025
2 downloadsMar 23, 2025
6 downloadsMar 24, 2025
2 downloadsMar 25, 2025
2 downloadsMar 26, 2025
3 downloadsMar 27, 2025
7 downloadsMar 28, 2025
6 downloadsMar 29, 2025
3 downloadsMar 30, 2025
1 downloadsMar 31, 2025
5 downloadsApr 1, 2025
6 downloadsApr 2, 2025
0 downloadsApr 3, 2025
0 downloadsApr 4, 2025
0 downloadsApr 5, 2025
0
9

The following line graph shows the downloads per day. You can hover over the graph to see the exact number of downloads per day.

Last 365 days

This package has been downloaded 1,746 times in the last 365 days. Consider this 'mid-tier influencer' status—if it were a TikTok, it would get a nod from nieces and nephews. The day with the most downloads was Sep 11, 2024 with 24 downloads.

The following line graph shows the downloads per day. You can hover over the graph to see the exact number of downloads per day.

Data provided by CRAN


Binaries


Dependencies

  • Imports2 packages
  • Suggests5 packages
  • Linking To1 package