CRAN/E | SKAT

SKAT

SNP-Set (Sequence) Kernel Association Test

Installation

About

Functions for kernel-regression-based association tests including Burden test, SKAT and SKAT-O. These methods aggregate individual SNP score statistics in a SNP set and efficiently compute SNP-set level p-values.

Key Metrics

Version 2.2.5
R ≥ 2.13.0
Published 2023-01-15 520 days ago
Needs compilation? yes
License GPL-2
License GPL-3
CRAN checks SKAT results

Downloads

Yesterday 31 0%
Last 7 days 254 -32%
Last 30 days 1.207 -2%
Last 90 days 3.596 -17%
Last 365 days 15.294 -13%

Maintainer

Maintainer

Seunggeun (Shawn) Lee

Authors

Seunggeun

(Shawn)

Lee
Zhangchen Zhao
Larisa Miropolsky
Michael Wu

Material

Reference manual
Package source

Vignettes

SKAT

macOS

r-release

arm64

r-oldrel

arm64

r-release

x86_64

r-oldrel

x86_64

Windows

r-devel

x86_64

r-release

x86_64

r-oldrel

x86_64

Old Sources

SKAT archive

Depends

R ≥ 2.13.0
Matrix
SPAtest
RSpectra

Reverse Depends

FSTpackage
GenoScan
LGEWIS
LGRF
Mega2R
WGScan

Reverse Imports

AllelicSeries
GBJ
MetaSKAT
SMUT

Reverse Suggests

BGData
bigQF
FastKM
seqminer