CRAN/E | SMITIDstruct

SMITIDstruct

Data Structure and Manipulations Tool for Host and Viral Population

Installation

About

Statistical Methods for Inferring Transmissions of Infectious Diseases from deep sequencing data (SMITID). It allow sequence-space-time host and viral population data storage, indexation and querying.

informatique-mia.inra.fr/biosp/anr-smitid-project
gitlab.paca.inra.fr/SMITID/structR
Bug report File report

Key Metrics

Version 0.0.5
R ≥ 3.3.0
Published 2019-06-14 1826 days ago
Needs compilation? no
License GPL-2
License GPL-3
License File
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Maintainer

Maintainer

Jean-Francois Rey

Authors

Jean-Francois Rey

aut / cre

Material

Reference manual
Package source

macOS

r-release

arm64

r-oldrel

arm64

r-release

x86_64

r-oldrel

x86_64

Windows

r-devel

x86_64

r-release

x86_64

r-oldrel

x86_64

Old Sources

SMITIDstruct archive

Depends

methods
utils
grDevices ≥ 3.0.0
graphics ≥ 3.0.0
R ≥ 3.3.0

Imports

ggplot2
sf ≥ 0.6.3
stats ≥ 3.0.2
Biostrings ≥2.0.0

Suggests

testthat ≥ 2.0

Reverse Suggests

SMITIDvisu