CRAN/E | SNPassoc

SNPassoc

SNPs-Based Whole Genome Association Studies

Installation

About

Functions to perform most of the common analysis in genome association studies are implemented. These analyses include descriptive statistics and exploratory analysis of missing values, calculation of Hardy-Weinberg equilibrium, analysis of association based on generalized linear models (either for quantitative or binary traits), and analysis of multiple SNPs (haplotype and epistasis analysis). Permutation test and related tests (sum statistic and truncated product) are also implemented. Max-statistic and genetic risk-allele score exact distributions are also possible to be estimated. The methods are described in Gonzalez JR et al., 2007 doi:10.1093/bioinformatics/btm025.

github.com/isglobal-brge/SNPassoc

Key Metrics

Version 2.1-0
R ≥ 4.0.0
Published 2022-12-14 552 days ago
Needs compilation? no
License GPL-2
License GPL-3
CRAN checks SNPassoc results

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Maintainer

Maintainer

Dolors Pelegri

Authors

Victor Moreno

aut

Juan R Gonzalez

aut

Dolors Pelegri

aut / cre

Material

README
Reference manual
Package source

Vignettes

SNPassoc: an R package to perform whole genome association studies

macOS

r-release

arm64

r-oldrel

arm64

r-release

x86_64

r-oldrel

x86_64

Windows

r-devel

x86_64

r-release

x86_64

r-oldrel

x86_64

Old Sources

SNPassoc archive

Depends

R ≥ 4.0.0

Imports

haplo.stats
mvtnorm
parallel
survival
tidyr
plyr
ggplot2
poisbinom

Suggests

testthat
knitr
rmarkdown
biomaRt
VariantAnnotation
GenomicRanges
IRanges
S4Vectors
org.Hs.eg.db
TxDb.Hsapiens.UCSC.hg19.knownGene
BiocStyle