SeqKat

Detection of Kataegis

CRAN Package

Kataegis is a localized hypermutation occurring when a region is enriched in somatic SNVs. Kataegis can result from multiple cytosine deaminations catalyzed by the AID/APOBEC family of proteins. This package contains functions to detect kataegis from SNVs in BED format. This package reports two scores per kataegic event, a hypermutation score and an APOBEC mediated kataegic score. Yousif, F. et al.; The Origins and Consequences of Localized and Global Somatic Hypermutation; Biorxiv 2018 doi:10.1101/287839.

  • Version0.0.8
  • R versionunknown
  • LicenseGPL-2
  • Needs compilation?Yes
  • Last release03/11/2020

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  • Depends2 packages
  • Imports1 package
  • Suggests4 packages
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