Seurat
Tools for Single Cell Genomics
A toolkit for quality control, analysis, and exploration of single cell RNA sequencing data. 'Seurat' aims to enable users to identify and interpret sources of heterogeneity from single cell transcriptomic measurements, and to integrate diverse types of single cell data. See Satija R, Farrell J, Gennert D, et al (2015) doi:10.1038/nbt.3192, Macosko E, Basu A, Satija R, et al (2015) doi:10.1016/j.cell.2015.05.002, Stuart T, Butler A, et al (2019) doi:10.1016/j.cell.2019.05.031, and Hao, Hao, et al (2020) doi:10.1101/2020.10.12.335331 for more details.
- Version5.2.1
- R versionR (≥ 4.0.0)
- LicenseMIT
- LicenseLICENSE
- Needs compilation?Yes
- Seurat citation info
- Last release01/24/2025
Documentation
Team
Rahul Satija
MaintainerShow author detailsSkylar Li
Show author detailsRolesContributorCharlotte Darby
Jeff Farrell
Show author detailsRolesContributorDavid Collins
Longda Jiang
Shiwei Zheng
Patrick Roelli
Show author detailsRolesContributorGesmira Molla
Paul Hoffman
Christoph Hafemeister
Saket Choudhary
Austin Hartman
Jaison Jain
Efthymia Papalexi
Tim Stuart
Yuhan Hao
Satija Lab and Collaborators
Show author detailsRolesfndKristof Torkenczy
Karthik Shekhar
Show author detailsRolesContributorAvi Srivastava
Andrew Butler
Isabella Grabski
Madeline Kowalski
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Dependencies
- Depends1 package
- Imports46 packages
- Suggests15 packages
- Linking To3 packages
- Reverse Depends3 packages
- Reverse Imports37 packages
- Reverse Suggests26 packages
- Reverse Enhances1 package