SimBIID

Simulation-Based Inference Methods for Infectious Disease Models

CRAN Package

Provides some code to run simulations of state-space models, and then use these in the Approximate Bayesian Computation Sequential Monte Carlo (ABC-SMC) algorithm of Toni et al. (2009) and a bootstrap particle filter based particle Markov chain Monte Carlo (PMCMC) algorithm (Andrieu et al., 2010 ). Also provides functions to plot and summarise the outputs.

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  • Depends1 package
  • Imports12 packages
  • Suggests3 packages
  • Linking To2 packages