SimRAD

Simulations to Predict the Number of RAD and GBS Loci

CRAN Package

Provides a number of functions to simulate restriction enzyme digestion, library construction and fragments size selection to predict the number of loci expected from most of the Restriction site Associated DNA (RAD) and Genotyping By Sequencing (GBS) approaches. SimRAD estimates the number of loci expected from a particular genome depending on the protocol type and parameters allowing to assess feasibility, multiplexing capacity and the amount of sequencing required.

  • Version0.96
  • R versionunknown
  • LicenseGPL-2
  • Needs compilation?No
  • Last release01/06/2016

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  • Depends3 packages
  • Imports2 packages
  • Suggests1 package