TiPS

Trajectories and Phylogenies Simulator

CRAN Package

Generates stochastic time series and genealogies associated with a population dynamics model. Times series are simulated using the Gillespie exact and approximate algorithms and a new algorithm we introduce that uses both approaches to optimize the time execution of the simulations. Genealogies are simulated from a trajectory using a backwards-in-time based approach. Methods are described in Danesh G et al (2022) doi:10.1111/2041-210X.14038.


Documentation


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Insights

Last 30 days

This package has been downloaded 199 times in the last 30 days. More than a random curiosity, but not quite a blockbuster. Still, it's gaining traction! The following heatmap shows the distribution of downloads per day. Yesterday, it was downloaded 10 times.

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0 downloadsFeb 9, 2025
0 downloadsFeb 10, 2025
0 downloadsFeb 11, 2025
21 downloadsFeb 12, 2025
6 downloadsFeb 13, 2025
11 downloadsFeb 14, 2025
1 downloadsFeb 15, 2025
12 downloadsFeb 16, 2025
2 downloadsFeb 17, 2025
12 downloadsFeb 18, 2025
5 downloadsFeb 19, 2025
27 downloadsFeb 20, 2025
9 downloadsFeb 21, 2025
2 downloadsFeb 22, 2025
5 downloadsFeb 23, 2025
2 downloadsFeb 24, 2025
2 downloadsFeb 25, 2025
9 downloadsFeb 26, 2025
7 downloadsFeb 27, 2025
2 downloadsFeb 28, 2025
2 downloadsMar 1, 2025
3 downloadsMar 2, 2025
4 downloadsMar 3, 2025
4 downloadsMar 4, 2025
18 downloadsMar 5, 2025
4 downloadsMar 6, 2025
2 downloadsMar 7, 2025
3 downloadsMar 8, 2025
1 downloadsMar 9, 2025
2 downloadsMar 10, 2025
9 downloadsMar 11, 2025
2 downloadsMar 12, 2025
10 downloadsMar 13, 2025
0 downloadsMar 14, 2025
0 downloadsMar 15, 2025
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27

The following line graph shows the downloads per day. You can hover over the graph to see the exact number of downloads per day.

Last 365 days

This package has been downloaded 2,451 times in the last 365 days. Now we’re talking! This work is officially 'heard of in academic circles', just like those wild research papers on synthetic bananas. The day with the most downloads was Sep 11, 2024 with 31 downloads.

The following line graph shows the downloads per day. You can hover over the graph to see the exact number of downloads per day.

Data provided by CRAN


Binaries


Dependencies

  • Imports4 packages
  • Suggests4 packages
  • Linking To1 package