TiPS
Trajectories and Phylogenies Simulator
Generates stochastic time series and genealogies associated with a population dynamics model. Times series are simulated using the Gillespie exact and approximate algorithms and a new algorithm we introduce that uses both approaches to optimize the time execution of the simulations. Genealogies are simulated from a trajectory using a backwards-in-time based approach. Methods are described in Danesh G et al (2022)
- Version1.2.3
- R version≥ 3.5.0
- LicenseGPL-2
- LicenseGPL-3
- Needs compilation?Yes
- TiPS citation info
- Last release05/23/2023
Documentation
Team
Gonche Danesh
Emma Saulnier
Show author detailsRolesAuthor, Copyright holderOlivier Gascuel
Show author detailsRolesAuthor, Copyright holderMarc Choisy
Show author detailsRolesAuthor, Copyright holder, Thesis advisorSamuel Alizon
Show author detailsRolesAuthor, Copyright holder, Thesis advisor
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- Depends1 package
- Imports7 packages
- Suggests4 packages
- Linking To1 package