TopDom
An Efficient and Deterministic Method for Identifying Topological Domains in Genomes
The 'TopDom' method identifies topological domains in genomes from Hi-C sequence data (Shin et al., 2016 doi:10.1093/nar/gkv1505). The authors published an implementation of their method as an R script (two different versions; also available in this package). This package originates from those original 'TopDom' R scripts and provides help pages adopted from the original 'TopDom' PDF documentation. It also provides a small number of bug fixes to the original code.
- Version0.10.1
- R version≥ 3.3.0
- LicenseGPL-2
- LicenseGPL-3
- Needs compilation?No
- TopDom citation info
- Last release05/06/2021
Documentation
Team
Henrik Bengtsson
MaintainerShow author detailsHanjun Shin
Show author detailsRolesAuthor, ctr, Copyright holderHarris Lazaris
Show author detailsRolesctr, Copyright holderGangqing Hu
Show author detailsRolesctr, Copyright holderXianghong Zhou
Show author detailsRolesctr
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- Imports4 packages
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