VLF
Frequency Matrix Approach for Assessing Very Low Frequency Variants in Sequence Records
Using frequency matrices, very low frequency variants (VLFs) are assessed for amino acid and nucleotide sequences. The VLFs are then compared to see if they occur in only one member of a species, singleton VLFs, or if they occur in multiple members of a species, shared VLFs. The amino acid and nucleotide VLFs are then compared to see if they are concordant with one another. Amino acid VLFs are also assessed to determine if they lead to a change in amino acid residue type, and potential changes to protein structures. Based on Stoeckle and Kerr (2012) doi:10.1371/journal.pone.0043992.
- Version1.1
- R versionunknown
- LicenseGPL (≥ 3)
- Needs compilation?No
- Last release08/18/2022
Team
Taryn B. T. Athey
Jarrett D. Phillips
Show author detailsRolesContributorPaul D. McNicholas
Show author detailsRolesAuthor, Maintainer
Insights
Last 30 days
Last 365 days
The following line graph shows the downloads per day. You can hover over the graph to see the exact number of downloads per day.
Data provided by CRAN
Binaries
Dependencies
- Reverse Imports1 package