aIc
Testing for Compositional Pathologies in Datasets
A set of tests for compositional pathologies. Tests for coherence of correlations with aIc.coherent() as suggested by (Erb et al. (2020) doi:10.1016/j.acags.2020.100026), compositional dominance of distance with aIc.dominant(), compositional perturbation invariance with aIc.perturb() as suggested by (Aitchison (1992) doi:10.1007/BF00891269) and singularity of the covariation matrix with aIc.singular(). Currently tests five data transformations: prop, clr, TMM, TMMwsp, and RLE from the R packages 'ALDEx2', 'edgeR' and 'DESeq2' (Fernandes et al (2014) doi:10.1186/2049-2618-2-15, Anders et al. (2013) doi:10.1038/nprot.2013.099).
- Version1.0
- R versionunknown
- LicenseGPL (≥ 3)
- Needs compilation?No
- Last release10/04/2022
Documentation
Team
Greg Gloor
Insights
Last 30 days
This package has been downloaded 277 times in the last 30 days. More than a random curiosity, but not quite a blockbuster. Still, it's gaining traction! The following heatmap shows the distribution of downloads per day. Yesterday, it was downloaded 10 times.
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Last 365 days
This package has been downloaded 3,564 times in the last 365 days. Now we’re talking! This work is officially 'heard of in academic circles', just like those wild research papers on synthetic bananas. The day with the most downloads was Aug 28, 2024 with 60 downloads.
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Dependencies
- Imports4 packages
- Suggests2 packages