adjclust

Adjacency-Constrained Clustering of a Block-Diagonal Similarity Matrix

CRAN Package

Implements a constrained version of hierarchical agglomerative clustering, in which each observation is associated to a position, and only adjacent clusters can be merged. Typical application fields in bioinformatics include Genome-Wide Association Studies or Hi-C data analysis, where the similarity between items is a decreasing function of their genomic distance. Taking advantage of this feature, the implemented algorithm is time and memory efficient. This algorithm is described in Ambroise et al (2019) doi:10.1186/s13015-019-0157-4.


Documentation


Team


Insights

Last 30 days

This package has been downloaded 482 times in the last 30 days. Enough downloads to make a small wave in the niche community. The curiosity is spreading! The following heatmap shows the distribution of downloads per day. Yesterday, it was downloaded 10 times.

Sun
Mon
Tue
Wed
Thu
Fri
Sat
0 downloadsMar 2, 2025
15 downloadsMar 3, 2025
18 downloadsMar 4, 2025
36 downloadsMar 5, 2025
11 downloadsMar 6, 2025
18 downloadsMar 7, 2025
8 downloadsMar 8, 2025
10 downloadsMar 9, 2025
16 downloadsMar 10, 2025
15 downloadsMar 11, 2025
26 downloadsMar 12, 2025
12 downloadsMar 13, 2025
15 downloadsMar 14, 2025
34 downloadsMar 15, 2025
12 downloadsMar 16, 2025
28 downloadsMar 17, 2025
9 downloadsMar 18, 2025
15 downloadsMar 19, 2025
21 downloadsMar 20, 2025
16 downloadsMar 21, 2025
8 downloadsMar 22, 2025
16 downloadsMar 23, 2025
8 downloadsMar 24, 2025
7 downloadsMar 25, 2025
16 downloadsMar 26, 2025
19 downloadsMar 27, 2025
33 downloadsMar 28, 2025
5 downloadsMar 29, 2025
18 downloadsMar 30, 2025
7 downloadsMar 31, 2025
10 downloadsApr 1, 2025
0 downloadsApr 2, 2025
0 downloadsApr 3, 2025
0 downloadsApr 4, 2025
0 downloadsApr 5, 2025
5
36

The following line graph shows the downloads per day. You can hover over the graph to see the exact number of downloads per day.

Last 365 days

This package has been downloaded 6,223 times in the last 365 days. A solid achievement! Enough downloads to get noticed at department meetings. The day with the most downloads was Aug 28, 2024 with 79 downloads.

The following line graph shows the downloads per day. You can hover over the graph to see the exact number of downloads per day.

Data provided by CRAN


Binaries


Dependencies

  • Imports6 packages
  • Suggests4 packages
  • Linking To2 packages
  • Reverse Imports2 packages