alakazam

Immunoglobulin Clonal Lineage and Diversity Analysis

CRAN Package

Provides methods for high-throughput adaptive immune receptor repertoire sequencing (AIRR-Seq; Rep-Seq) analysis. In particular, immunoglobulin (Ig) sequence lineage reconstruction, lineage topology analysis, diversity profiling, amino acid property analysis and gene usage. Citations: Gupta and Vander Heiden, et al (2017) doi:10.1093/bioinformatics/btv359, Stern, Yaari and Vander Heiden, et al (2014) doi:10.1126/scitranslmed.3008879.


Documentation


Team


Insights

Last 30 days

This package has been downloaded 20,580 times in the last 30 days. The academic equivalent of having a dedicated subreddit. There are fans, and maybe even a few trolls! The following heatmap shows the distribution of downloads per day. Yesterday, it was downloaded 64 times.

Sun
Mon
Tue
Wed
Thu
Fri
Sat
733 downloadsMar 23, 2025
888 downloadsMar 24, 2025
812 downloadsMar 25, 2025
756 downloadsMar 26, 2025
819 downloadsMar 27, 2025
848 downloadsMar 28, 2025
806 downloadsMar 29, 2025
781 downloadsMar 30, 2025
794 downloadsMar 31, 2025
788 downloadsApr 1, 2025
671 downloadsApr 2, 2025
794 downloadsApr 3, 2025
797 downloadsApr 4, 2025
775 downloadsApr 5, 2025
802 downloadsApr 6, 2025
800 downloadsApr 7, 2025
771 downloadsApr 8, 2025
797 downloadsApr 9, 2025
436 downloadsApr 10, 2025
810 downloadsApr 11, 2025
828 downloadsApr 12, 2025
772 downloadsApr 13, 2025
779 downloadsApr 14, 2025
803 downloadsApr 15, 2025
766 downloadsApr 16, 2025
756 downloadsApr 17, 2025
270 downloadsApr 18, 2025
36 downloadsApr 19, 2025
28 downloadsApr 20, 2025
64 downloadsApr 21, 2025
0 downloadsApr 22, 2025
0 downloadsApr 23, 2025
0 downloadsApr 24, 2025
0 downloadsApr 25, 2025
0 downloadsApr 26, 2025
28
888

The following line graph shows the downloads per day. You can hover over the graph to see the exact number of downloads per day.

Last 365 days

This package has been downloaded 61,387 times in the last 365 days. An impressive feat! Enough downloads to make even seasoned academics take note. The day with the most downloads was Mar 05, 2025 with 903 downloads.

The following line graph shows the downloads per day. You can hover over the graph to see the exact number of downloads per day.

Data provided by CRAN


Binaries


Dependencies

  • Depends1 package
  • Imports14 packages
  • Suggests3 packages
  • Linking To1 package
  • Reverse Imports6 packages