alakazam
Immunoglobulin Clonal Lineage and Diversity Analysis
Provides methods for high-throughput adaptive immune receptor repertoire sequencing (AIRR-Seq; Rep-Seq) analysis. In particular, immunoglobulin (Ig) sequence lineage reconstruction, lineage topology analysis, diversity profiling, amino acid property analysis and gene usage. Citations: Gupta and Vander Heiden, et al (2017) doi:10.1093/bioinformatics/btv359, Stern, Yaari and Vander Heiden, et al (2014) doi:10.1126/scitranslmed.3008879.
- Version1.3.0
- R versionunknown
- LicenseAGPL-3
- Needs compilation?Yes
- alakazam citation info
- Last release09/30/2023
Documentation
Team
Susanna Marquez
Jason Vander Heiden
Show author detailsRolesAuthorKenneth Hoehn
Show author detailsRolesAuthorNamita Gupta
Show author detailsRolesAuthorNima Nouri
Show author detailsRolesAuthorRuoyi Jiang
Show author detailsRolesAuthorJulian Zhou
Show author detailsRolesAuthorDaniel Gadala-Maria
Show author detailsRolesContributorEdel Aron
Show author detailsRolesContributorCole Jensen
Show author detailsRolesContributorSteven Kleinstein
Show author detailsRolesAuthor, Copyright holder
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- Depends1 package
- Imports14 packages
- Suggests3 packages
- Linking To1 package
- Reverse Imports6 packages