alakazam
Immunoglobulin Clonal Lineage and Diversity Analysis
Provides methods for high-throughput adaptive immune receptor repertoire sequencing (AIRR-Seq; Rep-Seq) analysis. In particular, immunoglobulin (Ig) sequence lineage reconstruction, lineage topology analysis, diversity profiling, amino acid property analysis and gene usage. Citations: Gupta and Vander Heiden, et al (2017) doi:10.1093/bioinformatics/btv359, Stern, Yaari and Vander Heiden, et al (2014) doi:10.1126/scitranslmed.3008879.
- Version1.3.0
- R versionunknown
- LicenseAGPL-3
- Needs compilation?Yes
- alakazam citation info
- Last release09/30/2023
Documentation
Team
Susanna Marquez
Jason Vander Heiden
Show author detailsRolesAuthorKenneth Hoehn
Show author detailsRolesAuthorNamita Gupta
Show author detailsRolesAuthorNima Nouri
Show author detailsRolesAuthorRuoyi Jiang
Show author detailsRolesAuthorJulian Zhou
Show author detailsRolesAuthorDaniel Gadala-Maria
Show author detailsRolesContributorEdel Aron
Show author detailsRolesContributorCole Jensen
Show author detailsRolesContributorSteven Kleinstein
Show author detailsRolesAuthor, Copyright holder
Insights
Last 30 days
This package has been downloaded 20,580 times in the last 30 days. The academic equivalent of having a dedicated subreddit. There are fans, and maybe even a few trolls! The following heatmap shows the distribution of downloads per day. Yesterday, it was downloaded 64 times.
The following line graph shows the downloads per day. You can hover over the graph to see the exact number of downloads per day.
Last 365 days
This package has been downloaded 61,387 times in the last 365 days. An impressive feat! Enough downloads to make even seasoned academics take note. The day with the most downloads was Mar 05, 2025 with 903 downloads.
The following line graph shows the downloads per day. You can hover over the graph to see the exact number of downloads per day.
Data provided by CRAN
Binaries
Dependencies
- Depends1 package
- Imports14 packages
- Suggests3 packages
- Linking To1 package
- Reverse Imports6 packages