anovir
Analysis of Virulence
Epidemiological population dynamics models traditionally define a pathogen's virulence as the increase in the per capita rate of mortality of infected hosts due to infection. This package provides functions allowing virulence to be estimated by maximum likelihood techniques. The approach is based on the analysis of relative survival comparing survival in matching cohorts of infected vs. uninfected hosts (Agnew 2019)
- Version0.1.0
- R version≥ 2.10
- LicenseGPL-3
- Needs compilation?No
- Last release10/24/2020
Documentation
- VignetteIntroduction
- VignetteConfidence intervals
- VignetteData format
- VignetteLikelihood functions described
- VignetteModifying nll functions
- VignetteUsing nll functions
- VignetteProbability distribution functions
- VignetteStarting values
- VignetteThe exponential distribution
- VignetteWorked examples I
- VignetteWorked examples II
Team
Philip Agnew
Jimmy Lopez
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- Depends3 packages
- Suggests4 packages