bbmix

Bayesian Model for Genotyping using RNA-Seq

CRAN Package

The method models RNA-seq reads using a mixture of 3 beta-binomial distributions to generate posterior probabilities for genotyping bi-allelic single nucleotide polymorphisms. Elena Vigorito, Anne Barton, Costantino Pitzalis, Myles J. Lewis and Chris Wallace (2023) doi:10.1093/bioinformatics/btad393 "BBmix: a Bayesian beta-binomial mixture model for accurate genotyping from RNA-sequencing."

  • Version1.0.0
  • R versionunknown
  • LicenseGPL-2
  • Needs compilation?Yes
  • Last release07/06/2023

Documentation


Team


Insights

Last 30 days

This package has been downloaded 291 times in the last 30 days. Now we're getting somewhere! Enough downloads to populate a lively group chat. The following heatmap shows the distribution of downloads per day. Yesterday, it was downloaded 8 times.

Sun
Mon
Tue
Wed
Thu
Fri
Sat
0 downloadsMar 2, 2025
0 downloadsMar 3, 2025
17 downloadsMar 4, 2025
11 downloadsMar 5, 2025
5 downloadsMar 6, 2025
11 downloadsMar 7, 2025
6 downloadsMar 8, 2025
5 downloadsMar 9, 2025
9 downloadsMar 10, 2025
14 downloadsMar 11, 2025
9 downloadsMar 12, 2025
10 downloadsMar 13, 2025
9 downloadsMar 14, 2025
12 downloadsMar 15, 2025
8 downloadsMar 16, 2025
14 downloadsMar 17, 2025
9 downloadsMar 18, 2025
9 downloadsMar 19, 2025
17 downloadsMar 20, 2025
10 downloadsMar 21, 2025
12 downloadsMar 22, 2025
9 downloadsMar 23, 2025
9 downloadsMar 24, 2025
6 downloadsMar 25, 2025
16 downloadsMar 26, 2025
9 downloadsMar 27, 2025
5 downloadsMar 28, 2025
7 downloadsMar 29, 2025
13 downloadsMar 30, 2025
4 downloadsMar 31, 2025
8 downloadsApr 1, 2025
8 downloadsApr 2, 2025
0 downloadsApr 3, 2025
0 downloadsApr 4, 2025
0 downloadsApr 5, 2025
4
17

The following line graph shows the downloads per day. You can hover over the graph to see the exact number of downloads per day.

Last 365 days

This package has been downloaded 3,161 times in the last 365 days. That's enough downloads to impress a room full of undergrads. A commendable achievement indeed. The day with the most downloads was Jul 23, 2024 with 35 downloads.

The following line graph shows the downloads per day. You can hover over the graph to see the exact number of downloads per day.

Data provided by CRAN


Binaries


Dependencies

  • Imports5 packages
  • Suggests2 packages
  • Linking To5 packages