bbmix

Bayesian Model for Genotyping using RNA-Seq

CRAN Package

The method models RNA-seq reads using a mixture of 3 beta-binomial distributions to generate posterior probabilities for genotyping bi-allelic single nucleotide polymorphisms. Elena Vigorito, Anne Barton, Costantino Pitzalis, Myles J. Lewis and Chris Wallace (2023) "BBmix: a Bayesian beta-binomial mixture model for accurate genotyping from RNA-sequencing."

  • Version1.0.0
  • R version≥ 3.4.0
  • LicenseGPL-2
  • Needs compilation?Yes
  • Last release07/06/2023

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  • Depends1 package
  • Imports6 packages
  • Suggests2 packages
  • Linking To5 packages