betaclust

A Family of Beta Mixture Models for Clustering Beta-Valued DNA Methylation Data

CRAN Package

A family of novel beta mixture models (BMMs) has been developed by Majumdar et al. (2022) doi:10.48550/arXiv.2211.01938 to appositely model the beta-valued cytosine-guanine dinucleotide (CpG) sites, to objectively identify methylation state thresholds and to identify the differentially methylated CpG (DMC) sites using a model-based clustering approach. The family of beta mixture models employs different parameter constraints applicable to different study settings. The EM algorithm is used for parameter estimation, with a novel approximation during the M-step providing tractability and ensuring computational feasibility.

  • Version1.0.4
  • R versionunknown
  • LicenseGPL-3
  • Needs compilation?Yes
  • Last release09/24/2024

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Last 30 days

This package has been downloaded 250 times in the last 30 days. Now we're getting somewhere! Enough downloads to populate a lively group chat. The following heatmap shows the distribution of downloads per day. Yesterday, it was downloaded 6 times.

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The following line graph shows the downloads per day. You can hover over the graph to see the exact number of downloads per day.

Last 365 days

This package has been downloaded 3,289 times in the last 365 days. Consider this 'mid-tier influencer' status—if it were a TikTok, it would get a nod from nieces and nephews. The day with the most downloads was Sep 26, 2024 with 61 downloads.

The following line graph shows the downloads per day. You can hover over the graph to see the exact number of downloads per day.

Data provided by CRAN


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Dependencies

  • Imports6 packages
  • Suggests2 packages